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Creator: Organization: Anonymous ()
Creator: Tool: reuse-6.1.0
Created: 2026-09-12T23:14:54Z
CreatorComment: This document was created automatically using available reuse information consistent with REUSE.
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FileCopyrightText: Copyright (C) ...` / `## This file is part of nprcgenekeepr` pair from inside each roxygen block to file-top, above the first `#'` line with one blank separator (the `getSpeciesGestation.R` exemplar) -- 203 of 225 files moved, 22 already-correct skipped. **REFACTOR-class; no behavior change, no rendered-doc change; TDD RED/GREEN N/A; 0 corrections / 0 overrides** (1 owner gate: full-sweep vs sample-first). **(1) The two checks that make per-file review unnecessary.** (a) ZERO `man/` drift: after `devtools::document()`, `git status --porcelain man/` is empty -- decisive because roxygen2 IGNORES every `##` (and plain `#`) comment, so relocating/removing them CANNOT reach any `.Rd`; the only edit roxygen could notice is the blank-`#'`-seam collapse, and merging two blank doc lines is a no-op for paragraph breaks. (b) ZERO code-line change: a code-only projection diff per changed file (`diff <(git show HEAD:f | grep -vE
Copyright (C) ` -> `## Copyright(c)` AND `^#' This file is part of nprcgenekeepr` -> `##` (convert BOTH -- converting only the copyright line would promote "This file is part of" to the new title), plus `Copyright(c) [0-9][0-9-]* R. Mark Sharp` -> `2017-2026` (the one regex also fixes the malformed bare `2026`). This turns Pattern B into Pattern A in place -- no relocation needed. DRY-RUN the perl (no `-i`) on each representative shape FIRST: line-1-leak (title), mid-block-leak, Pattern-A-year-only, malformed-year. For the 16 header-less files, PREPEND `## Copyright / ## This file is part of / ` (all 16 opened with a `#'` title, so the `##`+blank sits safely above the block). **(3) Verify a 400+-file sweep by COUNTS + DIFF-CLEANLINESS, never eyeballing.** After applying: `git grep "^#' Copyright"` and `"^#' This file is part of"` must be 0; the year distribution must collapse to a single `2017-2026` bucket; `git diff | grep '^[+-]' | grep -vE 'Copyright|This file is part of|^[+-][[:space:]]*$'` must be EMPTY (proves zero code lines changed). Then `devtools::document()` and confirm `man/` changed ONLY ~22 files, `git grep Copyright -- man/` is 0, the 2 titles are real, NAMESPACE is unchanged, and `R CMD check` says "code/documentation mismatches ... OK". **The decisive sync proof: re-run `document()` a second time -> `git status --short man/` is EMPTY (zero drift = every committed `.Rd` is a faithful regen, not a hand-edit)** -- this is exactly what an independent blind adversarial agent used to confirm PASS A-I. **(4) `R/`+`man/` ship, so re-gate even for comment-only.** Both are in the tarball -> the `--as-cran` gate re-stales (Learning 226/227); re-ran build + `--as-cran --timings` = `Status: 2 NOTEs` = 0/0/2 (the two documented false-positives unchanged) -- a comment/title fix introduces no new note, but the gate is the authoritative confirmation. **(5) "Full normalization" = whole-package; commit the CRAN-relevant core separately.** The ratified option counted `R/` (197 stale years / 25 leaks / 16 bare) but full normalization also covers `tests/` (195) + `data-raw/` (3); committed `R/`+`man/` (`0c77f4d1`) separately from `tests/`+`data-raw/` (`d7556d5e`) so the CRAN-relevant core is cleanly revertable, and FLAG the full 413-source-file scope to the owner (the option text was R/-scoped -- extending to tests/ is correct for "full" but should be surfaced). Carried as applied: [[observation-vs-decision]], [[consult-project-source-of-truth]], [[avoid-new-lints-r-package]], [[keep-dev-process-refs-out-of-user-docs]], [[push-close-out-docs-to-origin]]. **This was a REFACTOR-class docs/metadata session -- TDD RED/GREEN N/A.** (S243, normalize copyright headers + fix roxygen man-page leak -> branch `normalize-copyright-headers`, owner-gated landing)
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FileChecksum: SHA1: 63a72d96cf759dc02ae81b49f5a271d0323ec050
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getCurrentAge.R
SPDXID: SPDXRef-2cfc6f02573e6481d1baa95cee2197e1
FileChecksum: SHA1: 853090fa6f4809fe144b1960f166bcad0bd4c6fe
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getDateColNames.R
SPDXID: SPDXRef-d4857e18af6d9479daa9b54d3c84d809
FileChecksum: SHA1: f0f9cbcde51ca4b162df4aede52dc0c096460f5e
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getDateErrorsAndConvertDatesInPed.R
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FileChecksum: SHA1: c07d62143be4d1fb266118655cd9fe1977a2d245
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getDatedFileName.R
SPDXID: SPDXRef-29ae7d0ab26619dc7cdc2dbfd6e2af6e
FileChecksum: SHA1: 0be2605e3cbcbabfc0975be2d136b395e86ba42d
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getDemographics.R
SPDXID: SPDXRef-f4faaec305a2f3c32569d0a5ec28faa8
FileChecksum: SHA1: d9d0b1861e019997e1b3c6adad678c3ce0efa9d0
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getDescendantPedigree.R
SPDXID: SPDXRef-47ccca1273f8e2ec10fd2934c08de76c
FileChecksum: SHA1: f193659b7b362bd72acbdc5ef1643bafe0c297f1
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getEmptyErrorLst.R
SPDXID: SPDXRef-c6a772f5d9cdff00608165e25818f3cd
FileChecksum: SHA1: 527766fa6f542daa9dbc2e7f3c3c41e6ef0cd840
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
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SPDXID: SPDXRef-eff56ff12a887549e2ac331fac0e4963
FileChecksum: SHA1: 06351fbae2e4879792c747af90f71c6537d3c981
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getFileDirectRelatives.R
SPDXID: SPDXRef-a58d3640561969287e2cd7adcbcbbaf6
FileChecksum: SHA1: 73f2daccc5af513e65c4407f12235a8a3582d240
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
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SPDXID: SPDXRef-5c421fb3f54ed935d9caae3dc7f4e515
FileChecksum: SHA1: d9ade4a3a8b29e73d7c1a5d5cbf76be65bcedc80
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
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SPDXID: SPDXRef-310087c74e0b122a300ce535239aa73c
FileChecksum: SHA1: ad89068ef7e50674b9eb73df99b3280ed2098511
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getFounders.R
SPDXID: SPDXRef-65614c2e6f7fac2f06e0588adea61969
FileChecksum: SHA1: f23177590d6c1eab0d059e8c7d61bd1f74992bd7
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
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SPDXID: SPDXRef-079d559fdaceb8d3344d4bd97e7cca06
FileChecksum: SHA1: a7b38aa2d2309448d9538fcf5a59359550906afc
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
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SPDXID: SPDXRef-d5dc071d2e1b755792e7d1b0172524da
FileChecksum: SHA1: b11474d2a15f4c96184d69bd8e8200a6ea6357f7
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getGeneticDiversityStats.R
SPDXID: SPDXRef-5fcde72ad500cbb62a9c970245a71be7
FileChecksum: SHA1: bb1c26a2b44ba143c243ac677f5e55fdab18c4ed
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getGenoDefinedParentGenotypes.R
SPDXID: SPDXRef-ce3c75f290606ad201e371f682c90b34
FileChecksum: SHA1: 912396176316484eaeae831cae8ff515f5ada21b
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
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SPDXID: SPDXRef-b0f893e683f38dcb1ce68733131c0301
FileChecksum: SHA1: 5c64d17b82740e16eef1560f655d78390b8fa862
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getIdsWithOneParent.R
SPDXID: SPDXRef-02a2faacb933a58ac6b920ef6c86d605
FileChecksum: SHA1: 89b834bd781d272254e56c2b0d8b12998277bb3d
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
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SPDXID: SPDXRef-d32d692ae86b10464cfc8f418248f687
FileChecksum: SHA1: 16b5bd6da85192409b6eaa8f9af3d62b2936f7f5
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getIndianOriginStatus.R
SPDXID: SPDXRef-9af841a885568b59477e3fdbf87728f3
FileChecksum: SHA1: 790be89804c81a290a4066f500d19cec61128b3d
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getKinshipWithMaleStatus.R
SPDXID: SPDXRef-c9cc7de9e8cefc2dad73c5802f55e8bf
FileChecksum: SHA1: 5e996d563562bd477b83f2670fa5ccfd8bada491
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getLivingBreeders.R
SPDXID: SPDXRef-29b4c578db089aaf810e4ebc18d834b4
FileChecksum: SHA1: cda2afc2ccf3f6bbbe1663e7e74f640fb2243cf1
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getLkDirectAncestors.R
SPDXID: SPDXRef-569338fdb4898377b128a5b15dfee1af
FileChecksum: SHA1: edcf11bf8a818715b9b11844a46505d0d11c37b6
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
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SPDXID: SPDXRef-c3af0e0cdead2dd15f46b5e797f10640
FileChecksum: SHA1: f63a5cda40b725ec6e63f8c78f55ff6132dd1e8c
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getMaxAx.R
SPDXID: SPDXRef-01ae607ad6392fc4cfb0c244ca74df1e
FileChecksum: SHA1: fdc232f130c76a5b59ccf22e12c10ded782ba1a5
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getOffspring.R
SPDXID: SPDXRef-4fb1dc8481b3590d0e723f0a920479f1
FileChecksum: SHA1: ed461023416604d1915f10196addec8f62ef44cf
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getParamDef.R
SPDXID: SPDXRef-410ebe7ffab4d6a00baeb75c25a141ba
FileChecksum: SHA1: b288410bb83b3950e58b8cd7b6c0f52724094934
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getParents.R
SPDXID: SPDXRef-334dde3b11de78b014fd111ae42be698
FileChecksum: SHA1: 5b08e1b33bc5c5b79e69b040a93ae1bcbc99062b
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getPedDirectRelatives.R
SPDXID: SPDXRef-57170f613773c6487a7ba398b1e476bb
FileChecksum: SHA1: 3b0328f385ed7315a74bf6c12af9e26f42d753dd
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getPedMaxAge.R
SPDXID: SPDXRef-ad77524ba27fb02b1f93dd9f22e66f54
FileChecksum: SHA1: a03e08edb1963f4df5381bac42734cca667d7391
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getPedigree.R
SPDXID: SPDXRef-4335e1cfafebc20e54335c10053fb38c
FileChecksum: SHA1: f9b3b5872e7aa652ede2ffa59c1a512d9ccb39e5
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getPedigreeSource.R
SPDXID: SPDXRef-c6d3dd8d0bd2c89a9786dcf95dad57f7
FileChecksum: SHA1: b062fc43980b3af7dad5018c7b4a965f70695288
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getPossibleCols.R
SPDXID: SPDXRef-d4220500cc98e75eb7533a6dd4d2fe39
FileChecksum: SHA1: f87b57a48afcd8e48252fd5b44b4e9508885132d
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getPotentialParents.R
SPDXID: SPDXRef-c34f8c339d4ad8bb234c9295bb022202
FileChecksum: SHA1: 53e639877ce20499d5645d549ed61ad1ce4aa5bc
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getPotentialSires.R
SPDXID: SPDXRef-e32504ffb8fa29701f9fc1711b1e63e0
FileChecksum: SHA1: 48d45a01d834ca8c6ea8ec5d79aeb20870af80bc
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getProbandPedigree.R
SPDXID: SPDXRef-85fac69cac235dbaaf241cca4e9cc546
FileChecksum: SHA1: 4e85f2e5e89f8cf08220ac930c20570488639f4a
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getProductionStatus.R
SPDXID: SPDXRef-68a6309bddc166e0aa61000615f2677d
FileChecksum: SHA1: e9f7a4bf99596a7ecba52e4b87e0276fbd8d7dbb
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getProportionLow.R
SPDXID: SPDXRef-c25a60c3918f3f34811d379b01e23c3a
FileChecksum: SHA1: 3dd891e6326687d64458c267d668c6b6f852a87c
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getPyramidAgeDist.R
SPDXID: SPDXRef-42016853c14f8509d8fa3236e02afff1
FileChecksum: SHA1: 91e417d1a9eb8009184ce365bcf4f7bbafc64576
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getPyramidPlot.R
SPDXID: SPDXRef-b830ef09331e2d3f561435fd50961b7f
FileChecksum: SHA1: 317a9b6a4430f9365c9210a42a3c3d3b355a13b6
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getRecordStatusIndex.R
SPDXID: SPDXRef-00ef6217cf300fe7bf2ad6a72b9916f9
FileChecksum: SHA1: 2c9e3e7f5474f5c24976c7711b8a236e032a474a
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getRequiredCols.R
SPDXID: SPDXRef-2e6b9818801814ea7d9727d168117d0c
FileChecksum: SHA1: d791cd042a7c6a2a6a724f09c779e5a7c1077d84
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getSexRatioWithAdditions.R
SPDXID: SPDXRef-a6d95d8ef08985de04ca81f9533efc30
FileChecksum: SHA1: 9af1767382f68aa242223a6909f5b523eac2c827
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getSiteInfo.R
SPDXID: SPDXRef-a92ebc8c59dd986402eb895193e956b0
FileChecksum: SHA1: e21bc5406fb6cae7659136c98c5126eb2dcd1206
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getSpeciesGestation.R
SPDXID: SPDXRef-aa35004c09109bc5718e6b9b60042f73
FileChecksum: SHA1: cfe0ec4d2213610516f459445ab07803cad0debd
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getSpeciesMinBreedingAge.R
SPDXID: SPDXRef-c59f1ad8fc2caf47195de48f8d6dc1d1
FileChecksum: SHA1: a492e6e9ee99dc5a80f7637489ef6c710bca0756
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getSpeciesOverridesPath.R
SPDXID: SPDXRef-5ea215f71e30024ce3f635592fea9e64
FileChecksum: SHA1: 4491ed49e1bf51384063cd2f39a7d7eaa2df06f0
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getTokenList.R
SPDXID: SPDXRef-38d3af3561d2c19b8854cd9cca128cb6
FileChecksum: SHA1: b823621f217d1c40c3120db4aac959822b1a1445
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/getVersion.R
SPDXID: SPDXRef-51e7bf4f774f2b61286d13561a334e7c
FileChecksum: SHA1: 0bb4168cf035ec35da9d3d3050ef5445553c240f
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/get_and_or_list.R
SPDXID: SPDXRef-4aa79287b55230e3ce544a922a1a4182
FileChecksum: SHA1: e2299e3f59c9ace9cd4e5a9ba862529f63b5548c
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/get_elapsed_time_str.R
SPDXID: SPDXRef-9940f43641ee4fc385601f851dd7edfa
FileChecksum: SHA1: 063c39c7972bcbeea15f063c80b6a07eaead6034
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/groupAddAssign.R
SPDXID: SPDXRef-973162b319972c22a1ae962203e5729b
FileChecksum: SHA1: 71b11d3cb316458134e53f0fbf2c91f9f4693985
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/groupMembersReturn.R
SPDXID: SPDXRef-278084771fedf845ae49858ad3d1fbad
FileChecksum: SHA1: 4f1b769189c879b99174fcb90b95c19b72e93277
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/gvaConvergence.R
SPDXID: SPDXRef-a7134edfed6bf4442c1f693e43596755
FileChecksum: SHA1: caa657460a6edb257326ae8746b66b3691f034a5
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/hasBothParents.R
SPDXID: SPDXRef-c64a3be42a4fcd82bf15e1e996dc44c1
FileChecksum: SHA1: a42d5b699c6983275abb6d899950dbf7b62bbcf3
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/hasGenotype.R
SPDXID: SPDXRef-485e32f5b6eae351ebe533038eed7ecd
FileChecksum: SHA1: dce31e386aad7de0b2523550fcba2b7728da7be3
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/hasInvalidIdChar.R
SPDXID: SPDXRef-65174b3fd4781f4bb77a9014cf6cc1d2
FileChecksum: SHA1: 5fcf7e7715508adcfa1b5c38b090a5fa17aa5b37
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/hasNetrc.R
SPDXID: SPDXRef-391df5aa01b153d293af3c7e310d2287
FileChecksum: SHA1: 5cce6761faf782448e813486c025277083dd73d6
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/headerDisplayNames.R
SPDXID: SPDXRef-48b09ad4d3d4cd77e192c218bea67cbd
FileChecksum: SHA1: e003b79fd42b07bca2fabf52d5836990d74e69db
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/initializeHaremGroups.R
SPDXID: SPDXRef-52da5bed49e8708ff4f156560a3098ff
FileChecksum: SHA1: e1f8838d08e15c7113fd81524f4a8d36271be860
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/insertChangedColsTab.R
SPDXID: SPDXRef-839c0b6083102a2fd75a1371bfaac8db
FileChecksum: SHA1: bed5921d00be58a20c45461915bc25d23a99ffdc
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/insertErrorTab.R
SPDXID: SPDXRef-835fa858d0df8149b84c3a00c6a60ec3
FileChecksum: SHA1: 21e87dd9ab4b76d3eb86400e2749374f5f539b42
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/insertSeparators.R
SPDXID: SPDXRef-32915bacfcf49b623c116c3459360706
FileChecksum: SHA1: 3ddc8e28e62d2ddfa55a36ab522de27bea4470a5
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/isEmpty.R
SPDXID: SPDXRef-9f7335136d91e3fbf2ff12f8009405d5
FileChecksum: SHA1: ccd605d4b0d6b2cafb9ffcbd3894e9aaf02b5244
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/isFounder.R
SPDXID: SPDXRef-e8f2e8c44c858dff76b2c87025e2e216
FileChecksum: SHA1: 79a2c9b5694f94312b1d8316a09c66f1610bf9ff
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/is_valid_date_str.R
SPDXID: SPDXRef-0923414e240153e4899417f104cb74c4
FileChecksum: SHA1: a0266abbf6cf0a73ae42da05f025acdec0261060
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/kinMatrix2LongForm.R
SPDXID: SPDXRef-156c0d7c3284eebf7a68137c44b34e4c
FileChecksum: SHA1: 535d5bc4b18168eea38bfcb84dd0708f0f270912
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/kinship.R
SPDXID: SPDXRef-ff304b41d0e38e579cc3499c0355fef6
FileChecksum: SHA1: 65037774365b35defe5ae54a49f1f65ae9ecb2f0
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/kinshipMatricesToKValues.R
SPDXID: SPDXRef-5ea91c1483fc40259c2f34aceafa324b
FileChecksum: SHA1: 8b0620273d8001e9a55f5e67a654b0d493f15ea3
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/kinshipMatrixToKValues.R
SPDXID: SPDXRef-9b0bd15daf087c822731c3e15d746545
FileChecksum: SHA1: f14f291107ab1d71e423e79d4c2547baa18ca25d
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/loadSiteConfig.R
SPDXID: SPDXRef-e48f85f4472415bd84091006e73eabc5
FileChecksum: SHA1: 9c5d61cb4761aaab4fb169f16e24622aff3ed62f
LicenseConcluded: NOASSERTION
LicenseInfoInFile: MIT
FileCopyrightText: Copyright (C) 2017-2026 R. Mark Sharp
FileName: ./R/loadSpeciesOverrides.R
SPDXID: SPDXRef-1450719918793eff3a93c4e1f4c0e20a
FileChecksum: SHA1: edc9ad8a8a9b4a5bc00998d4777c29134818883d
LicenseConcluded: NOASSERTION
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FileCopyrightText: © 1999-2026 John Wiley & Sons... All rights reserved") on a PUBLIC repo (`gh repo view --json
Copyright (C) 2017-2026 R. Mark Sharp` / `## This file is part of nprcgenekeepr` pair from inside each roxygen block to the top of the file, above the first `#'` line with one blank separator (the `getSpeciesGestation.R` exemplar). **REFACTOR-class doc-structure — no behavior change, no rendered-doc change; TDD RED/GREEN N/A. DONE + VERIFIED on branch `issue103-stage2-copyright-placement` (1 code commit `af08b5bf` + this close-out commit, UNPUSHED — landing owner-gated); 0 stakeholder corrections / 0 owner overrides** (1 owner gate via `AskUserQuestion`: full-sweep-now vs sample-first → owner chose full-sweep-now).
Copyright (C) 2017-2026 R. Mark Sharp`, fix the leak, regenerate man/, re-gate. **REFACTOR-class docs/metadata -- no behavior change; TDD RED/GREEN N/A.** **DONE + VERIFIED on branch `normalize-copyright-headers` (2 code commits, UNPUSHED -- landing owner-gated); 0 stakeholder corrections / 0 owner overrides.** **CRAN Phase 5b deferred to a follow-up session on this corrected, re-gated tree.
Copyright (C) 2017-2026 R. Mark Sharp`; 0 copyright in man/; NAMESPACE unchanged; the 2 titles restored to real titles; suite **0/0** (7 baseline warnings, 169 skips); **re-gate GREEN `Status: 2 NOTEs`=0/0/2** (the 2 documented false-positives; `00check.log` "code/documentation mismatches ... OK"). **Independent blind adversarial audit (`Agent` a496f620faf0dc335) = PASS A-I**, decisively via re-`document()` -> empty `git status man/` (zero drift).
Copyright (C) 2017-2026, 2025-07-29**; R. Mark Sharp` / `## This file is part of nprcgenekeepr` style (now uniform across the package). (2) **This branch is UNPUSHED -- landing is owner-gated** (FF / PR / review); the `tests/`+`data-raw/` commit is separately revertable if a smaller diff is wanted. (3) **`R/`+`man/` SHIP** -> this sweep re-staled and re-cleared the `--as-cran` gate (GREEN 0/0/2 on the branch tree); any further package change re-stales it again (Learning 226/227). (4) **Phase 5b prereqs are all verified GREEN this session** (carry forward): `master==origin/master`@2.0.0 was the branch point; tooling present; **PAT already satisfied** (gh token `repo`+`workflow`); DESCRIPTION 2.0.0 / cre=rmsharp@me.com; `cran-comments.md` markers at `:53-54` intact + NOTE 1 pre-reconciled (S242). Only owner-confirmable gap: unfiltered `rmsharp@me.com`. (5) Carried standing keeps (unchanged): package **ARCHIVED on CRAN CRAN resubmission owner-gated; win-builder/R-hub/`submit_cran()` are OWNER-run outward + HARD STOP; the `--as-cran` gate certifies the CURRENT tree only; `NEWS.md`/`README.md` are GENERATED (from `NEWS.Rmd`/`README.Rmd`); module/E2E tests need `NOT_CRAN=true` BUT `--as-cran` SKIPS them via `skip_on_cran` (do NOT set NOT_CRAN for the gate); a 0/0/0 check does NOT imply spelling-clean -> `spell_check_package` (hand-add wordlist terms, never `update_wordlist` -- [[avoid-reconcile-tools-on-curated-files]]); `getLkDirectRelatives()`/`getDemographics()` FAIL SOFT without LabKey config; `git pull` is rebase + chokes on `.DS_Store`; re-check `git status` before ANY `reset --hard` ([[check-status-before-destructive-git]]); **zsh `status` is a read-only special variable**; `gh pr edit`/`gh issue view ` 401 on the Projects-classic deprecation -> use `gh api`/`--json`; closing-keyword discipline for any PR/issue body.
Copyright (C) 2017-2024`, 2026 headers — a future sweep could reconcile to alongside the LICENSE fix.
© Nature
© Oxford University Press; a saved Wiley page, "Copyright
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FileCopyrightText: SPDX-FileCopyrightText: 2017-2026 R. Mark Sharp
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SPDXID: SPDXRef-f5d14be26f89c63fe18b75949642ec19
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